FastQCFastQC Report
Wed 8 May 2024
EGAF00007963021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485647
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54101.113977848107782No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42120.8672966166783693No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12610.2596536167216106No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9010.18552570076619437No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8090.16658190002203246No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6960.14331397084713793No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6950.143108059969484No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6230.12828247677840077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)