FastQCFastQC Report
Wed 8 May 2024
EGAF00007963023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492897
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT66891.3570786594359472No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28890.5861265132471896No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15580.3160903799373906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12960.26293525827911307No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8170.16575471143058285No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7670.15561060424388867No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6850.13897426845771021No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6760.13714832916410527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)