FastQCFastQC Report
Wed 8 May 2024
EGAF00007963025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468672
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT64941.3856172333743002No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58011.237752628704083No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13780.2940222586371706No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11470.24473405708043153No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7750.16536084937866993No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7180.15319882561791617No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6670.14231701488461013No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6050.12908814693431656No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)