FastQCFastQC Report
Wed 8 May 2024
EGAF00007963027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494998
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT69181.3975814043693107No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29240.5907094574119491No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15440.3119204522038473No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13230.26727380716689764No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8190.16545521396046045No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7740.15636426813845714No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6880.13899046056751746No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6610.13353589307431546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)