FastQCFastQC Report
Wed 8 May 2024
EGAF00007963029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476756
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT65541.3747073974947353No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56551.1861413385463422No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15000.3146263497470404No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12450.26113987029004354No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8010.16801047076491957No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7560.15857168027250837No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6860.14388911728431317No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6230.13067481059493744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)