FastQCFastQC Report
Wed 8 May 2024
EGAF00007963031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491255
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29460.5996885527882667No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC24520.4991297798495689No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT12310.25058269127031785No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10900.22188069332627658No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8710.17730099439191457No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8330.1695657041658609No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7760.1579627688267804No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5460.11114390693224496No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5350.10890474397207152No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5300.10788694262653815No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5000.10178013455333788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)