FastQCFastQC Report
Wed 8 May 2024
EGAF00007963032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466402
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT22290.4779139025990454No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG10850.23263193554058517No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7740.16595126092941284No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7680.1646648170462391No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7250.1554453025501606No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5030.1078468788727321No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4910.1052739911063846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)