FastQCFastQC Report
Wed 8 May 2024
EGAF00007963033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466402
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57711.2373446082992783No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC23700.5081453338536284No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT12700.2722972886051089No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10580.2268429380663033No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7810.16745211212644887No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7490.16059107808285555No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7250.1554453025501606No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5200.11149180320839105No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4890.10484517647866003No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4880.10463076916479774No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG4850.1039875472232109No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4820.10334432528162402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)