FastQCFastQC Report
Wed 8 May 2024
EGAF00007963034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494599
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT23070.46643846833495417No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG10930.22098710268318375No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8760.17711317653290848No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8320.16821708090796786No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7570.15305328154727366No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5490.11099901132028168No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5380.10877498741404654No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5160.10432693960157621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)