FastQCFastQC Report
Wed 8 May 2024
EGAF00007963035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494599
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28170.5695523039876749No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC24600.4973726190307704No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT12400.2507081494301444No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10750.21734779083661715No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8570.17327168069486593No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8500.1718563927545345No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7420.1500205216751348No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5870.11868200299636675No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5730.11585142711570383No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5290.10695533149076324No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5240.10594441153338362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)