FastQCFastQC Report
Wed 8 May 2024
EGAF00007963037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475931
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55771.1718085184617097No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC22810.47927115485227906No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT12320.2588610533879911No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10480.22019998697290155No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8330.1750253713248349No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8000.16809159310908514No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7070.14855094541015398No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6030.12669903830597293No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5370.1128314818744734No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5180.10883930653813262No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4900.10295610077931466No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4830.10148529933961016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)