FastQCFastQC Report
Wed 8 May 2024
EGAF00007963038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497486
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11240.22593600623937157No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8710.17508030376734218No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8070.16221562013805413No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7820.1571903530953635No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6420.12904885765629587No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5790.11638518470871541No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5220.10492757585138074No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5110.10271645835259685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)