FastQCFastQC Report
Wed 8 May 2024
EGAF00007963039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497486
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31050.6241381667021786No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14630.29407862733825674No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9980.20060866034421068No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8820.17729142126612607No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8780.17648737853929558No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7060.14191354128558392No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6600.13266704992703313No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6180.12422460129531283No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5550.11156092834773239No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5280.1061336399416265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)