FastQCFastQC Report
Wed 8 May 2024
EGAF00007963040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470064
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10610.2257139453351033No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8040.17104053916062492No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7720.16423295551244085No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7130.15168147316110145No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6070.12913135232649173No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5530.11764355492018108No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5240.11147418223901426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)