FastQCFastQC Report
Wed 8 May 2024
EGAF00007963041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470064
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58311.2404693828925422No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13790.2933643078389325No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8970.1908250791381599No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8110.1725296980836652No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8020.17061506518261343No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6400.13615167296368155No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6330.13466251404064128No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5450.11594165900813506No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5410.11509071105211205No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5180.11019776030497974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)