FastQCFastQC Report
Wed 8 May 2024
EGAF00007963043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499093
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29400.5890685703866815No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13930.2791062988260705No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9690.19415219207642664No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8310.16650203469092936No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8240.16509949047572298No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6890.13805042346817126No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6520.13063697547350894No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5960.11941662175185787No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5860.11741298715870589No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5680.11380644489103232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)