FastQCFastQC Report
Wed 8 May 2024
EGAF00007963044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476671
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10900.2286692498599663No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8030.1684600070069293No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7760.1627957228360861No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7510.15755101527049054No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6110.12818065290315542No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5370.11265631850899258No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5220.10950949396963525No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5170.10846055245651613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)