FastQCFastQC Report
Wed 8 May 2024
EGAF00007963045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476671
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55641.1672621157989473No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13640.28615124477889364No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8670.18188645837485395No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8420.17664175080925837No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8320.17454386778302014No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6460.1355232434949892No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6140.12881001781102688No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5630.11811081437721196No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5430.11391504832473551No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5220.10950949396963525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)