FastQCFastQC Report
Wed 8 May 2024
EGAF00007963047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470522
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59611.2668908148821947No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27410.5825444931374091No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27050.5748934162483369No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17940.38127866497209484No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17580.37362758808302265No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16460.34982423776146493No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC13520.2873404431673758No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12940.2750137081794263No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11640.24738481941333243No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11140.23675832373406558No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10580.22485664857328666No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9690.2059414862641917No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9060.19255210170831544No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8080.1717241701769524No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7730.1642856232014656No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7460.1585473155346615No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7440.15812225570749083No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7390.15705960613956416No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7360.15642201639880815No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7010.14898346942332133No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6900.14664564037388264No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6590.1400572130527372No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6420.13644420452178643No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6330.13453143529951841No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6230.13240613616366503No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6220.1321936062500797No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5950.1264552985832756No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5770.12262976013873952No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5630.11965434134854482No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5530.11752904221269145No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5460.11604133281759407No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC5440.11561627299042339No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5340.11349097385457002No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC5260.11179073454588734No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5240.11136567471871665No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5120.10881531575569262No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5090.1081777260149366No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5020.10669001661983925No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA4790.10180182860737648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)