FastQCFastQC Report
Wed 8 May 2024
EGAF00007963049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446518
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT56991.2763203275119928No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54761.2263783318925552No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25680.5751167926041055No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17530.39259335569898635No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17160.3843070156186313No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15200.3404118087064799No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC12020.26919407504288745No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11700.26202751064906676No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11250.25194952947025656No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10140.22709050922919122No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9400.21051782906848102No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9390.2102938739311741No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8600.19260141808392942No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7860.17602873792321921No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7450.16684657729363653No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7340.1643830707832607No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6950.1556488204282918No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6940.1554248652909849No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6770.1516176279567677No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6560.1469145700733229No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6520.14601874952409533No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6260.14019591595411607No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6200.1388521851302747No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5650.1265346525783955No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5590.12519092175455412No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5550.12429510120532655No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5510.12339928065609895No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5470.1225034601068714No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5350.11981599845918867No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5290.11847226763534728No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC5180.11600876112497144No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5110.1144410751638232No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5030.11264943406536802No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA4920.11018592755499218No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4860.10884219673115082No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4840.10839428645653704No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC4750.10637869022077497No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA4500.1007798117881026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)