FastQCFastQC Report
Wed 8 May 2024
EGAF00007963051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474875
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61341.291708344301132No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28690.6041589892076862No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26660.5614108976046328No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18490.3893656225322453No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18080.38073177151882076No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17000.35798894445906815No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC13220.27838904974993417No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12360.260279020794946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11710.24659120821268754No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11020.23206106870229007No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9960.209739405106607No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9940.20931824164253748No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9330.196472755988418No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8260.17394051066070018No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7910.16657015003948408No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7750.16320084232692814No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7710.16235851539878915No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7630.16067386154251118No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7060.14867070281653066No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7000.1474072124243222No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6680.1406685969992103No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6450.13582521716241114No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6280.13224532771782047No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6200.13056067386154252No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6170.12992892866543826No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC6160.12971834693340353No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6120.12887602000526455No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6110.1286654382732298No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5800.12213740458015268No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC5770.12150565938404843No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5520.11624111608317979No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5450.11476704395893657No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5420.11413529876283234No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5390.11350355356672809No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5370.1130823901026586No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC5270.11097657278231114No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4930.10381679389312977No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4780.10065806791260859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)