FastQCFastQC Report
Wed 8 May 2024
EGAF00007963054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467479
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10340.22118640623429073No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10240.2190472727117154No Hit
CAGACGGGAGCGTTTTGCCGGCAGCAGACCGGAACCACCACCGC8850.1893133167479181No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8440.18054286930535918No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7670.164071541181529No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7600.16257414771572626No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6050.1294175781158084No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5700.12193061078679471No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5300.11337407669649333No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5060.1082401562423125No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5030.10759841618553988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)