FastQCFastQC Report
Wed 8 May 2024
EGAF00007963056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443278
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9250.2086726613998439No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8950.2019048994084976No Hit
CAGACGGGAGCGTTTTGCCGGCAGCAGACCGGAACCACCACCGC8730.19694187394817697No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7640.17235233871295214No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7300.16468220845609302No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6910.15588411786734283No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5690.12836188576920127No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5570.12565478097266275No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5270.11888701898131646No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4780.1078330077287842No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4670.1053514949986239No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4500.10151642987019432No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4460.10061406160468149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)