FastQCFastQC Report
Wed 8 May 2024
EGAF00007963057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443278
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57311.2928681324135194No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18770.42343630859189946No Hit
GGCGAATCTGTGGCGGGCAACAGCATCTGCT10010.22581765844458782No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9360.2111541741300042No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9330.21047739793086956No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9060.2043864121386579No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7590.1712243783810611No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7450.16806608945176615No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6800.15340260513718254No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6540.14753721141134907No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6230.14054385735362457No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5980.13490405569416936No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5880.13264813503038725No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5860.13219695089763084No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5240.11821024278218183No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5070.11437517765375228No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5060.11414958558737405No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5050.11392399352099586No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4570.10309557433484179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)