FastQCFastQC Report
Wed 8 May 2024
EGAF00007963058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470077
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10210.2171984589758699No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9540.20294547489028394No Hit
CAGACGGGAGCGTTTTGCCGGCAGCAGACCGGAACCACCACCGC9250.19677627282338853No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8310.17677954888241715No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7930.1686957668637266No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7380.15699555604720078No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6210.13210601667386407No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5600.11912941922280819No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5550.11806576369403311No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG4990.10615282177175228No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4930.1048764351372222No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4720.1004090819163669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)