FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007963059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470077
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27990.595434365008286No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20640.4390770022783501No Hit
GGCGAATCTGTGGCGGGCAACAGCATCTGCT10890.2316641741672109No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9710.2065619036881192No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9480.20166908825575386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8940.19018160854498306No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8010.1703976157097667No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7290.15508097609540564No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7050.1499754295572853No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6980.1484863118170002No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6900.14678446297096007No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6870.14614626965369504No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6400.13614790768320936No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5910.1257240835012136No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5330.11338567936742278No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5030.10700374619477233No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5020.10679101508901732No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5000.10636555287750729No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4820.10253639297391705No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4760.10126000633938696No Hit

[OK]Adapter Content

Adapter graph