FastQCFastQC Report
Wed 8 May 2024
EGAF00007963060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448510
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9710.21649461550467103No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9290.20713027580210028No Hit
CAGACGGGAGCGTTTTGCCGGCAGCAGACCGGAACCACCACCGC8810.1964281732848766No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8150.181712782323694No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7510.1674433123007291No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7040.15696417025261422No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6180.1377895699092551No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5360.11950681144233127No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5270.11750016722035182No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5000.1114802345544135No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5000.1114802345544135No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4660.10389957860471338No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4630.1032306971973869No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4490.10010925062986333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)