FastQCFastQC Report
Wed 8 May 2024
EGAF00007963063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464328
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27680.5961303216691649No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24060.518168191450871No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9040.19468996054513188No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8980.19339777054151377No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8980.19339777054151377No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7400.15937010044623628No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6720.14472528040523078No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6100.1313726503678434No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6070.13072655536603436No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5760.12405024034734066No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5120.11026688030874726No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC4790.10315983528884755No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4730.10186764528522942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)