FastQCFastQC Report
Wed 8 May 2024
EGAF00007963065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441863
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56621.2813926488526985No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22570.5107918065101626No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8810.19938306669714367No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8320.18829365663112774No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7570.17132006979538905No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7080.16023065972937314No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6090.13782552510619808No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5710.12922557444275715No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5540.12537822809332305No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5060.11451513251845029No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4920.11134672964244574No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC4460.10093626304985934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)