FastQCFastQC Report
Wed 8 May 2024
EGAF00007963067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466985
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27210.5826739616904183No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24660.5280683533732347No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9580.20514577556024283No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8550.18308939259290985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8050.17238241056993264No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7760.1661723609966059No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6740.14433011766973242No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6420.13747764917502703No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6140.1314817392421598No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5970.1278413653543476No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5220.11178089231988181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)