FastQCFastQC Report
Wed 8 May 2024
EGAF00007963069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449665
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55261.2289148588393581No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24420.5430709528204329No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9770.21727285868368673No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8770.19503408092691224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7670.17057142539446032No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7580.16856993539635062No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6190.13765803431443407No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5810.12920729876685977No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5760.12809535987902107No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5230.11630880766793057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)