FastQCFastQC Report
Wed 8 May 2024
EGAF00007963078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497583
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT17410.349891374906297No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16130.32416702339107245No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG13890.2791494082394294No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13800.2773406647735152No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA13620.2737231778416867No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12950.26025808759543634No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12440.250008541288589No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11610.23332790710293558No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11500.231117220644596No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11330.22770070520898023No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10740.21584338693243138No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT10580.21262784299302828No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9900.1989617812505652No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9870.19835886676192716No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9670.19433943683767332No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9510.19112389289827025No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9280.1865015484853783No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9160.184089890530826No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT8800.1768549166671691No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT8540.1716296577656391No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8400.1688160568186614No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8300.1668063418565345No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8100.16278691193228065No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG7960.15997331098530296No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7610.15293930861785873No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7550.1517334796405826No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7310.14691016373147797No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6890.13846936089054487No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6850.1376654749056941No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6690.13444993096629104No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6660.13384701647765296No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6290.12641107111778335No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6160.12379844166701837No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6130.1231955271783803No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6120.12299455568216759No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5820.11696541079578683No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5640.11334792386395838No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5010.10068671960255877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)