FastQCFastQC Report
Wed 8 May 2024
EGAF00007963080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471471
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15940.33809078395065656No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15700.333000333000333No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG13490.2861257638327702No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA13180.2795505980219356No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12890.2733996364569613No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12100.2566435687454796No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11240.23840278617348684No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11180.23713017343590595No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11010.23352443734609338No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT10740.22779768002697937No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10680.22652506728939847No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9980.21167791868428812No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9700.20573905924224398No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9490.20128491466071086No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8980.19046770639127328No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8890.18855878728490194No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8700.18452884694922914No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT8340.1768931705237438No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT8280.1756205577861629No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8260.17519635354030258No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8000.16968169834411873No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7970.16904539197532828No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG7850.1665001665001665No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7540.1599250006893319No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7350.15589506035365908No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7030.14910779241989433No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6710.14232052448612958No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6600.13998740113389793No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6410.13595746079822513No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6290.13341223532306334No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6280.1332001332001332No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5970.1266249673892986No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5710.12111031219311473No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5640.1196255973326037No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5600.1187771888408831No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5580.1183529845950228No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5500.11665616761158164No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT4840.10265742749819183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)