FastQCFastQC Report
Wed 8 May 2024
EGAF00007963082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499750
Total Bases21.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16620.33256628314157083No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16030.32076038019009506No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14000.2801400700350175No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG13380.26773386693346674No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA13320.26653326663331667No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12960.2593296648324162No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12690.2539269634817409No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11790.23591795897948972No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11750.2351175587793897No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11610.23231615807903952No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT11360.22731365682841423No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10950.21910955477738872No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10440.20890445222611306No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10290.20590295147573787No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9610.19229614807403703No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9370.18749374687343673No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT9190.1838919459729865No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9160.18329164582291146No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8850.17708854427213608No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT8790.175887943971986No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8770.17548774387193597No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8510.17028514257128566No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG8430.16868434217108555No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG8280.16568284142071035No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8240.16488244122061033No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7440.14887443721860932No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7230.14467233616808406No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7130.1426713356678339No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7080.14167083541770886No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6640.1328664332166083No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6620.13246623311655828No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6450.12906453226613307No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6390.127863931965983No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6220.12446223111555778No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6120.12246123061530766No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6090.12186093046523262No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5610.11225612806403203No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5200.10405202601300652No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5070.10145072536268133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)