FastQCFastQC Report
Wed 8 May 2024
EGAF00007963084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480788
Total Bases21.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15700.32654725159529774No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15550.32342737339534267No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA13410.2789171110759836No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13270.2760052247560255No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12660.26331772007620824No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12170.253126117956355No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12160.252918126076358No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11670.24272652395650476No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11180.2325349218366515No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11040.22962303551669344No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10760.2237992628767773No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT10700.22255131159679525No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9610.1998801966771217No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9440.19634433471717264No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9120.1896885945572685No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9030.18781666763729543No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9000.18719269199730443No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8760.18220088687737632No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT8750.1819928949973793No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT8470.17616912235746315No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8090.16826543091757698No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG7880.16389760143763987No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7780.16181768263766982No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7720.1605697313576878No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7640.15890579631771176No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7200.14975415359784355No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6710.1395625514779903No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6690.13914656771799627No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6480.1347787382380592No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6470.13457074635806218No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6400.13311480319808314No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6400.13311480319808314No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6040.12562709551819098No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6020.12521111175819696No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5890.12250721731823588No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5860.12188324167824488No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5720.11897135535828682No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5100.1060758587984725No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT4850.10087606179854738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)