FastQCFastQC Report
Wed 8 May 2024
EGAF00007963086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475745
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13210.2776697600605367No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12450.26169481549990015No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10990.23100610621236164No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9200.19338090783928366No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6140.12906073631882628No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5920.12443641026179991No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5750.12086306739955228No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4970.10446772956100431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)