FastQCFastQC Report
Wed 8 May 2024
EGAF00007963087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475745
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29980.6301695235893178No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28270.5942258983278857No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13280.27914113653322686No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11760.2471912474119539No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11490.24151593816014882No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11050.23226728604609612No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6530.13725840523810023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)