FastQCFastQC Report
Wed 8 May 2024
EGAF00007963088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449600
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12640.28113879003558717No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10470.23287366548042704No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9470.21063167259786478No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8720.19395017793594307No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5790.1287811387900356No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5330.11854982206405693No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5320.11832740213523131No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4830.10742882562277581No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)