FastQCFastQC Report
Wed 8 May 2024
EGAF00007963089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449600
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59571.3249555160142348No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25760.5729537366548043No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12180.2709074733096085No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11220.24955516014234874No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11140.24777580071174377No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9600.21352313167259787No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5910.13145017793594305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)