FastQCFastQC Report
Wed 8 May 2024
EGAF00007963091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457535
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57461.255860207415826No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25970.5676068497491995No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13180.2880653939042915No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11610.25375107915241457No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10740.23473614040455923No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10090.22052957697225348No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6070.13266744620630117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)