FastQCFastQC Report
Wed 8 May 2024
EGAF00007963092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512239
Total Bases22.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG30340.5923016404451829No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG21560.4208972764666493No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16770.3273862396264244No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14390.2809235532632228No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13300.2596444237943616No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11850.23133732495963796No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10780.21044863823332466No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9480.1850698599677104No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8490.16574294421158872No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8220.16047196718719192No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6830.13333619658011203No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6690.13060309738227663No Hit
AACAATGGCGGTGCCACGGTTTTCGATCGCGGTCGCGTTCACAC6500.12689389132807147No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA6430.12552734172915378No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6240.1218181356749486No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6030.11771848687819554No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5950.11615671590800387No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5930.11576627316545597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)