FastQCFastQC Report
Wed 8 May 2024
EGAF00007963093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512239
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30930.6038197013503462No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG30140.5883972130197037No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27740.5415440839139543No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG23350.4558419019246875No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16720.3264101327700546No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14440.2818996601195926No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14190.2770191258377437No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13340.26042530927945745No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10620.20732509629294138No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9270.1809702111709573No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8630.16847604340942413No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7530.14700169256928894No Hit
TCCACCACTCTGGTAGACGTCAACAAAGATG7460.14563514297037125No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6900.13470274617902972No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG6380.12455123487278398No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6150.12006114333348301No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5950.11615671590800387No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5720.1116666243687029No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5690.11108096025488103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)