FastQCFastQC Report
Wed 8 May 2024
EGAF00007963094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488477
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG27670.5664545106524974No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG21090.431750113106656No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15960.3267298153239559No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14180.29029002389058234No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12950.26510971857426247No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10550.21597741551802851No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9720.19898582737774756No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8810.18035649580225888No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7630.15619978013294383No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7390.15128654982732043No Hit
AACAATGGCGGTGCCACGGTTTTCGATCGCGGTCGCGTTCACAC6830.13982234578086583No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6660.13634214098104927No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6510.13327137204003464No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6010.1230354755699859No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA5910.12098829627597615No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5620.11505147632334789No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5420.11095711773532838No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5400.11054768187652643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)