FastQCFastQC Report
Wed 8 May 2024
EGAF00007963095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488477
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62621.2819436739089047No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG27670.5664545106524974No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25220.5162986179492586No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG23200.47494559621026167No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15840.3242732001711442No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14140.2894711521729785No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13870.28394376807915217No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13090.2679757695858761No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10100.2067651086949846No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8120.1662309586735916No Hit
TCCACCACTCTGGTAGACGTCAACAAAGATG7890.16152244629736917No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7610.15579034427414187No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7100.14534972987469216No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6550.13409024375763853No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG5740.11750809147615957No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5700.11668921975855567No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5590.11443732253514495No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5550.11361845081754106No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5400.11054768187652643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)