FastQCFastQC Report
Wed 8 May 2024
EGAF00007963096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515889
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG29320.5683393133018925No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG22050.4274175258631217No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16540.3206116044342872No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14560.282231255173109No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13690.26536716231592455No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12170.2359034598527978No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10540.20430751576405No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9010.17464997315313951No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8240.15972428177379241No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8190.1587550810348738No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7170.13898338596093346No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6910.1339435421185565No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6640.12870985812839583No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6500.12599609605942363No Hit
AACAATGGCGGTGCCACGGTTTTCGATCGCGGTCGCGTTCACAC6380.12367001428601888No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6110.11843633029585822No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA5920.11475336748796737No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5570.10796896231553686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)