FastQCFastQC Report
Wed 8 May 2024
EGAF00007963097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515889
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29660.5749298783265393No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG28880.5598103467994083No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28730.5569027445826524No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG24180.4687054773410559No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16810.32584528842444793No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15040.2915355822667279No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14730.28552653768543235No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13790.2673055637937618No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10080.19539086896599847No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8650.1676717278329253No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8540.1655394862073043No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7150.138595705665366No Hit
TCCACCACTCTGGTAGACGTCAACAAAGATG7050.13665730418752872No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6770.1312297800495843No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6550.1269652967983423No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6410.12425153472937008No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6140.11901785073920941No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG5790.11223344556677892No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5710.11068272438450907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)