FastQCFastQC Report
Wed 8 May 2024
EGAF00007963098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493678
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG29240.5922889008625055No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG21240.4302399539780991No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16210.3283516786245285No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG14580.2953342056968307No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12930.2619116104019219No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11760.23821195192007746No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10340.20944826384809534No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9030.18291274879577377No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8430.17075907777944327No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7600.1539464995401861No Hit
AACAATGGCGGTGCCACGGTTTTCGATCGCGGTCGCGTTCACAC6950.1407800226058281No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6500.13166476934358023No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6340.1284237904058921No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6310.12781610685507558No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5760.11667524175677263No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA5670.11485219110432307No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5120.10371132600602011No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5050.10229339772078157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)