FastQCFastQC Report
Wed 8 May 2024
EGAF00007963099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493678
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60731.2301540680362504No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG29200.5914786561280835No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26730.541446043777523No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG22690.4596113256008978No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15970.32349021021799634No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG14520.2941188385951977No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13880.28115492284444515No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12810.25948087619865584No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10010.20276374478911352No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8610.17440517908434244No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8180.16569504818930558No Hit
TCCACCACTCTGGTAGACGTCAACAAAGATG7950.16103614096637892No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7080.14341331799269968No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6570.1330826976288188No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5910.11971365951085526No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5760.11667524175677263No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5720.1158649970223506No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG5590.113231701635479No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5250.10634462139289172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)