FastQCFastQC Report
Wed 8 May 2024
EGAF00007963100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430156
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC16870.39218330094198384No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC14440.33569216749272357No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG14100.3277880582858312No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12280.2854778266489367No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG12040.2798984554440715No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11710.27222682003738174No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG8350.1941156231692688No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG7530.175052771552646No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG7000.162731660141902No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG6920.16087186974028028No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6880.1599419745394694No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT6550.15227033913277974No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6540.15203786533257702No Hit
GTCCAGCAGGTCGCGGTCGTTGTAGACACGTGGGGTATCAGTAT6170.14343633472507647No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT6120.1422739657240629No Hit
GTCCAGCAGATCGCGATCGTTGTAGACACGCGGGGTGTCGGTGT6080.14134407052325204No Hit
GACTGCAGAGCTCGCCTGACCGTGGCCGGTACCGCTGTGGCGGG6080.14134407052325204No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5990.13925180632142758No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT5880.1366945945191977No Hit
CGCACCTGCGCCAGCCGGTACGTTAACACCCGCGCCGAAGGTCA5290.12297864030723737No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5290.12297864030723737No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG5250.1220487451064265No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG4930.11460958349993955No Hit
CTGGTGATGGCTGCCATGACGCTCGCCCGCGCTGCTACGTGCCT4450.10345084109020913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)