FastQCFastQC Report
Wed 8 May 2024
EGAF00007963101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007963101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430156
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27730.6446498479621346No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA17450.40566678135374146No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG15730.3656812877188741No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14220.3305777438882638No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG13990.32523084648360134No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12930.3005886236621133No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11780.2738541366388008No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT11670.2712969248365709No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG10020.23293874780312257No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC7260.16877597894717267No Hit
GCCGAAGTGCTGGCCCAAGTTGTTAAATCTC7220.16784608374636178No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7200.16738113614595634No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6730.15645486753642865No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6580.1529677605333879No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6490.1508754963315634No Hit
GGCACTCGTCACACCCAGAACTCCTCTAGCG6380.14831828452933354No Hit
CCGCTGGATATTGACACCGCGTCTGAATCCG6310.14669096792791453No Hit
GCGCGTGCCGCTCACCCGCCGACTAGCATGC6130.14250643952426562No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6050.14064664912264388No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5910.13739201591980585No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5530.12855801151210258No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5390.12530337830926455No Hit
TCTGGTGACGAAGATAGCGACTCCTCCGATG5330.12390853550804824No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4670.1085652646946689No Hit
ATCGACACCTCCAAAAAACAGATCTACCGCC4410.10252094588939828No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4340.10089362928797925No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4340.10089362928797925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)